Data quality metrics extracted from 5kxl.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5KXL at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
SSRL BEAMLINE BL14-1
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
SSRL
Beamline
_diffrn_source.pdbx_synchrotron_beamline
BL14-1
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2013-07-19
Detector
_diffrn_detector.type
MARMOSAIC 325 mm CCD
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.21549
Software
Data reduction
_software.classification
XDS
Data scaling
_software.classification
SCALA (3.3.20)
Refinement
_software.classification
PHENIX
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 43 21 2
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
77.312 77.312 37.213 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
1.21549 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
33.530 33.530 1.260
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.198 3.790 1.200
Rmerge
_reflns.pdbx_Rsym_value _reflns_shell.Rmerge_I_obs
0.025 0.025 0.118
Rmeas
_reflns.pdbx_Rrim_I_all _reflns_shell.pdbx_Rrim_I_all
0.028 0.029 0.133
Rpim
_reflns.pdbx_Rpim_I_all _reflns_shell.pdbx_Rpim_I_all
0.013 0.014 0.060
Total number of observations
_reflns.pdbx_number_measured_all _reflns_shell.number_measured_all
187823 5704 22950
Total number unique
_reflns.number_obs _reflns_shell.number_unique_all
35993 1264 5015
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
38.60 18.80 6.60
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
99.5 98.5 97.2
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
5.2 4.5 4.6
  CC(1/2) - - -

Refinement
PDB entry ID
_entry.id
5KXL
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2016-07-20
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
38.7 - 1.198 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1503 / 0.1640
Structure solution method
_refine.pdbx_method_to_determine_struct
FOURIER SYNTHESIS
Starting model
_refine.pdbx_starting_model
2BLX