Data quality metrics extracted from 7ktm.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 7KTM at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
APS BEAMLINE 22-ID
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
APS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
22-ID
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2018-12-05
Detector
_diffrn_detector.type
DECTRIS EIGER X 16M
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.00
Software
Data reduction
_software.classification
HKL-2000
Data scaling
_software.classification
HKL-2000
Phasing
_software.classification
PHENIX
Refinement
_software.classification
PHENIX (1.15.2_3472)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 21 21 21
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
60.241 62.223 118.797 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
1.00000 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
50.000 50.000 1.560
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.528 4.150 1.530
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.085 0.068 0.949
Rmeas
_reflns.pdbx_Rrim_I_all _reflns_shell.pdbx_Rrim_I_all
0.094 0.075 1.032
Rpim
_reflns.pdbx_Rpim_I_all _reflns_shell.pdbx_Rpim_I_all
0.038 0.031 0.400
  Total number of observations - - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_obs
67772 3580 3344
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
12.10 - -
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
99.2 97.0 99.0
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
6.2 5.6 6.4
CC(1/2)
_reflns_shell.pdbx_CC_half
- 0.993 0.710

Refinement
PDB entry ID
_entry.id
7KTM
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2020-11-24
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
35.0 - 1.528 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1604 / 0.1805
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
4M04