Data quality metrics extracted from 9ksy.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 9KSY at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
SSRF BEAMLINE BL02U1
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
SSRF
Beamline
_diffrn_source.pdbx_synchrotron_beamline
BL02U1
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2023-09-15
Detector
_diffrn_detector.type
DECTRIS EIGER2 S 9M
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.97895
Software
Data reduction
_software.classification
DIALS
Data scaling
_software.classification
DIALS
Phasing
_software.classification
PHENIX
Refinement
_software.classification
PHENIX (1.20.1_4487: ???)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 21 21 2
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
80.557 119.461 47.406 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97895 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
118.710 1.700
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.660 1.660
  Rmerge - -
  Rmeas - -
  Rpim - -
  Total number of observations - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_obs
54000 3930
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
7.00 -
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
100.0 99.9
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
12.2 12.3
CC(1/2)
_reflns.pdbx_CC_half _reflns_shell.pdbx_CC_half
0.974 0.247

Refinement
PDB entry ID
_entry.id
9KSY
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2024-11-30
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
30.7 - 1.770 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1878 / 0.2348
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
WARNING: no starting model (for MR) given