Data quality metrics extracted from 9ks5.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 9KS5 at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
CAMD BEAMLINE GCPCC
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
CAMD
Beamline
_diffrn_source.pdbx_synchrotron_beamline
GCPCC
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2024-09-15
Detector
_diffrn_detector.type
DECTRIS PILATUS 300K
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.978
Software
Data reduction
_software.classification
HKL-3000
Data scaling
_software.classification
HKL-3000
Phasing
_software.classification
PHASER
Model building
_software.classification
Coot
Refinement
_software.classification
PHENIX (1.9_1692+SVN)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 21 21 2
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
106.48 134.99 58.00 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97800 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
32.200 2.270
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.200 2.200
Rmerge
_reflns.pdbx_Rmerge_I_obs
0.140 -
Rmeas
_reflns.pdbx_Rrim_I_all
0.156 -
Rpim
_reflns.pdbx_Rpim_I_all
0.048 -
  Total number of observations - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_obs
43305 3714
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
15.00 -
Completeness [%]
_reflns.percent_possible_obs
100.0 -
Multiplicity
_reflns.pdbx_redundancy
9.8 -
CC(1/2)
_reflns.pdbx_CC_half _reflns_shell.pdbx_CC_half
0.998 0.836

Refinement
PDB entry ID
_entry.id
9KS5
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2024-11-29
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
32.2 - 2.200 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1702 / 0.2116
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
WARNING: no starting model (for MR) given