Data quality metrics extracted from 5kpl.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5KPL at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
CLSI BEAMLINE 08ID-1
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
CLSI
Beamline
_diffrn_source.pdbx_synchrotron_beamline
08ID-1
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2015-02-07
Detector
_diffrn_detector.type
MARMOSAIC 300 mm CCD
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.9795
Software
Data scaling
_software.classification
SCALEPACK
Refinement
_software.classification
REFMAC (5.8.0103)
General information
Spacegroup name
_symmetry.space_group_name_H-M
C 1 2 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
104.625 85.428 112.071 90.00 95.08 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97950 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
50.000 50.000 2.690
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.600 5.600 2.600
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.083 0.058 0.604
Rmeas
_reflns.pdbx_Rrim_I_all
0.098 - -
Rpim
_reflns.pdbx_Rpim_I_all
0.050 - -
Total number of observations
_reflns.pdbx_number_measured_all
114626 - -
Total number unique
_reflns.number_obs
30464 - -
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
11.30 - -
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
100.0 99.7 100.0
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
3.8 3.8 3.7
CC(1/2)
_reflns_shell.pdbx_CC_half
- 0.993 0.782

Refinement
PDB entry ID
_entry.id
5KPL
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2016-07-04
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
50.0 - 2.600 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1785 / 0.2438
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
WARNING: no starting model (for MR) given