Data quality metrics extracted from 3kpy.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 3KPY at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
ROTATING ANODE
Source details
_diffrn_source.type
RIGAKU FR-E+ SUPERBRIGHT
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2007-11-06
Detector
_diffrn_detector.type
RIGAKU SATURN 944
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.5418
Software
Data collection
_software.classification
JDirector
Data reduction
_software.classification
d*TREK
Data scaling
_software.classification
d*TREK (9.7 W8RSSI; Jul 11 2007; Jim W. Pflugrath; Jim.Pflugrath@Rigaku.com)
Phasing
_software.classification
MIFit
Refinement
_software.classification
PHENIX (Paul D. Adams; PDAdams@lbl.gov)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 43 21 2
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
93.908 93.908 188.615 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
1.54180 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
45.560 45.560 2.490
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.400 5.170 2.400
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.096 0.031 0.276
  Rmeas - - -
  Rpim - - -
Total number of observations
_reflns_shell.number_measured_all
- 9023 9547
Total number unique
_reflns.number_obs _reflns_shell.number_unique_all
30511 3113 2478
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
8.60 24.90 3.80
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
90.2 85.5 75.0
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
4.9 2.8 3.9
  CC(1/2) - - -

Refinement
PDB entry ID
_entry.id
3KPY
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2009-11-17
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
45.6 - 2.400 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2060 / 0.2710