Data quality metrics extracted from 6kdv.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.

Experimental information for 6KDV at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
MAD
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
PHOTON FACTORY BEAMLINE BL-17A
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
Photon Factory
Beamline
_diffrn_source.pdbx_synchrotron_beamline
BL-17A
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2013-05-19
Detector
_diffrn_detector.type
ADSC QUANTUM 270
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.97910,0.97937,0.96414
Software
Data reduction
_software.classification
HKL-2000
Data scaling
_software.classification
HKL-2000
Phasing
_software.classification
PHENIX
Refinement #1
_software.classification
PHENIX (1.15.2_3472)
Refinement #2
_software.classification
PHENIX (1.15.2_3472)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 21 21 2
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
116.547 201.199 77.660 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.979100.979370.96414 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å] 
_reflns.d_resolution_low _reflns_shell.d_res_low
 50.000 3.150
High resolution limit [Å] 
_reflns.d_resolution_high _reflns_shell.d_res_high
 3.100 3.100
Rmerge 
_reflns.pdbx_Rsym_value _reflns_shell.pdbx_Rsym_value
 0.130 0.540
  Rmeas - -
  Rpim - -
  Total number of observations - -
Total number unique 
_reflns.number_obs _reflns_shell.number_unique_obs
 33449 1633
<I/σ(I)> 
_reflns.pdbx_netI_over_sigmaI
 19.00 -
Completeness [%] 
_reflns.percent_possible_obs
 99.6 -
Multiplicity 
_reflns.pdbx_redundancy
 18.1 -
  CC(1/2) - -

Refinement
PDB entry ID
_entry.id
6KDV
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2019-07-02
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
19.9 - 3.110 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2392 / 0.2792
Structure solution method
_refine.pdbx_method_to_determine_struct
MAD