Data quality metrics extracted from 4kdu.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 4KDU at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
APS BEAMLINE 31-ID
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
APS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
31-ID
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2013-04-17
Detector
_diffrn_detector.type
RAYONIX MX225HE
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.9793
Software
Data reduction
_software.classification
MOSFLM
Data scaling
_software.classification
SCALA (3.3.20; 2011/05/18; Phil R. Evans; pre@mrc-lmb.cam.ac.uk)
Refinement
_software.classification
PHENIX (1.8.1_1168; Paul D. Adams; PDAdams@lbl.gov)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 1 21 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
65.603 56.105 67.216 90.00 107.78 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97930 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
64.004 24.196 1.690
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.600 5.060 1.600
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.083 0.044 0.261
  Rmeas - - -
  Rpim - - -
Total number of observations
_reflns_shell.number_measured_all
- 4829 22297
Total number unique
_reflns.number_obs _reflns_shell.number_unique_all
57253 1600 8315
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
7.30 14.00 2.90
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
93.3 79.3 93.5
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
2.8 3.0 2.7
  CC(1/2) - - -

Refinement
PDB entry ID
_entry.id
4KDU
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2013-04-25
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
24.2 - 1.600 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1680 / 0.2004
Structure solution method
_refine.pdbx_method_to_determine_struct
FOURIER SYNTHESIS