Data quality metrics extracted from 8k9d.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 8K9D at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
MAD
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
SSRF BEAMLINE BL17U
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
SSRF
Beamline
_diffrn_source.pdbx_synchrotron_beamline
BL17U
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2012-05-07
Detector
_diffrn_detector.type
ADSC QUANTUM 315
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.97922
Software
Data reduction
_software.classification
HKL-2000
Data scaling
_software.classification
HKL-2000
Phasing
_software.classification
PHASER
Model building
_software.classification
Coot
Refinement
_software.classification
PHENIX (1.20.1_4487)
General information
Spacegroup name
_symmetry.space_group_name_H-M
C 2 2 21
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
56.852 281.903 63.449 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97922 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
50.000 3.660
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
3.110 3.110
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.116 0.782
  Rmeas - -
  Rpim - -
  Total number of observations - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_obs
14540 408
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
17.30 -
Completeness [%]
_reflns.percent_possible_obs
96.5 -
Multiplicity
_reflns.pdbx_redundancy
6.0 -
  CC(1/2) - -

Refinement
PDB entry ID
_entry.id
8K9D
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2023-07-31
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
35.2 - 3.300 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2895 / 0.3022
Structure solution method
_refine.pdbx_method_to_determine_struct
MAD