Data quality metrics extracted from 5k8m.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5K8M at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
MAD
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
APS BEAMLINE 22-ID
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
APS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
22-ID
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2014-11-07
Detector
_diffrn_detector.type
MARMOSAIC 300 mm CCD
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.9793
Software
Data reduction
_software.classification
HKL-2000
Data scaling
_software.classification
HKL-2000
Phasing
_software.classification
AutoSol
Refinement
_software.classification
PHENIX (1.9_1692)
General information
Spacegroup name
_symmetry.space_group_name_H-M
I 4 2 2
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
175.27 175.27 354.09 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97930 Å

Data quality metricsOverall
Low resolution limit [Å]
_reflns.d_resolution_low
78.540
High resolution limit [Å]
_reflns.d_resolution_high
2.540
  Rmerge -
  Rmeas -
  Rpim -
  Total number of observations -
Total number unique
_reflns.number_obs
69712
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
10.41
Completeness [%]
_reflns.percent_possible_obs
94.8
Multiplicity
_reflns.pdbx_redundancy
10.8
  CC(1/2) -

Refinement
PDB entry ID
_entry.id
5K8M
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2016-05-30
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
78.5 - 2.750 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1783 / 0.2135
Structure solution method
_refine.pdbx_method_to_determine_struct
MAD