Data quality metrics extracted from 5k72.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5K72 at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
APS BEAMLINE 17-ID
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
APS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
17-ID
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2014-07-01
Detector
_diffrn_detector.type
DECTRIS PILATUS 6M-F
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1
Software
Data reduction
_software.classification
XDS
Data scaling
_software.classification
Aimless (0.3.5)
Phasing
_software.classification
MOLREP
Refinement
_software.classification
BUSTER-TNT (2.11.7)
General information
Spacegroup name
_symmetry.space_group_name_H-M
C 1 2 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
145.084 140.968 87.522 90.00 125.77 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
1.00000 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
70.480 70.480 2.570
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.220 4.450 2.220
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.066 0.033 0.479
Rmeas
_reflns.pdbx_Rrim_I_all
0.075 - -
Rpim
_reflns.pdbx_Rpim_I_all
0.036 - -
Total number of observations
_reflns.pdbx_number_measured_all
286999 - -
Total number unique
_reflns.number_obs
69626 - -
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
12.90 - -
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
99.6 98.3 99.9
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
4.1 4.0 4.2
CC(1/2)
_reflns.pdbx_CC_half
0.999 - -

Refinement
PDB entry ID
_entry.id
5K72
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2016-05-25
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
58.9 - 2.220 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2150 / 0.2250
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
2NRU