Data quality metrics extracted from 4k7d.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 4K7D at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
CLSI BEAMLINE 08ID-1
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
CLSI
Beamline
_diffrn_source.pdbx_synchrotron_beamline
08ID-1
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2012-05-16
Detector
_diffrn_detector.type
MARMOSAIC 300 mm CCD
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.2824
Software
Data collection
_software.classification
MxDC
Data reduction
_software.classification
MOSFLM (Andrew G.W. Leslie; andrew@mrc-lmb.cam.ac.uk)
Data scaling
_software.classification
SCALA (3.3.20; 2011/05/18; Phil R. Evans; pre@mrc-lmb.cam.ac.uk)
Phasing #1
_software.classification
SOLVE (Tom Terwilliger; terwilliger@LANL.gov)
Phasing #2
_software.classification
RESOLVE (Thomas C. Terwilliger; terwilliger@lanl.gov)
Phasing #3
_software.classification
PHENIX (1.8.2_1309)
Refinement
_software.classification
PHENIX (1.8.2_1309; Paul D. Adams; PDAdams@lbl.gov)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 21 21 21
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
84.700 106.625 154.216 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
1.28240 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
53.330 53.313 2.950
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.800 8.850 2.800
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.079 0.036 0.464
  Rmeas - - -
  Rpim - - -
Total number of observations
_reflns_shell.number_measured_all
- 10817 48748
Total number unique
_reflns.number_obs _reflns_shell.number_unique_all
35121 1238 5044
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
19.90 16.10 1.60
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
99.9 98.3 100.0
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
9.7 8.9 9.7
  CC(1/2) - - -

Refinement
PDB entry ID
_entry.id
4K7D
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2013-04-17
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
53.3 - 2.800 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1844 / 0.2330
Structure solution method
_refine.pdbx_method_to_determine_struct
SAD