Data quality metrics extracted from 3k79.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 3K79 at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
ROTATING ANODE
Source details
_diffrn_source.type
RIGAKU RUH3R
Temperature [K]
_diffrn.ambient_temp
113
Detector technology
_diffrn_detector.detector
IMAGE PLATE
Collection date
_diffrn_detector.pdbx_collection_date
2008-05-07
Detector
_diffrn_detector.type
RIGAKU RAXIS IV
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.54
Software
Data collection
_software.classification
CrystalClear
Data reduction
_software.classification
d*TREK
Data scaling
_software.classification
d*TREK (9.9L; Mar 5 2008; Jim W. Pflugrath; Jim.Pflugrath@Rigaku.com)
Phasing
_software.classification
PHASER (2.1.1; Thu Nov 22 16:35:27 2007; Randy J. Read; cimr-phaser@lists.cam.ac.uk)
Refinement
_software.classification
PHENIX (Paul D. Adams; PDAdams@lbl.gov)
General information
Spacegroup name
_symmetry.space_group_name_H-M
C 1 2 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
44.664 40.304 31.666 90.00 101.97 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
1.54000 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
29.630 29.630 2.030
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.960 4.210 1.960
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.032 0.021 0.167
  Rmeas - - -
  Rpim - - -
Total number of observations
_reflns_shell.number_measured_all
- 3059 145
Total number unique
_reflns.number_obs _reflns_shell.number_unique_all
2675 419 31
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
47.40 88.10 9.30
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
66.1 98.8 7.7
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
7.3 7.2 4.7
  CC(1/2) - - -

Refinement
PDB entry ID
_entry.id
3K79
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2009-10-12
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
29.6 - 1.960 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1630 / 0.2500
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
PDB ENTRY 1ROP