Data quality metrics extracted from 5k4p.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5K4P at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
ALS BEAMLINE 8.2.1
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
ALS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
8.2.1
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2016-04-05
Detector
_diffrn_detector.type
ADSC QUANTUM 315r
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.00
Software
Data reduction
_software.classification
iMOSFLM
Data scaling
_software.classification
SCALA (3.3.22)
Phasing
_software.classification
SHELX
Refinement
_software.classification
PHENIX (1.10.1_2155)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 43 21 2
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
59.08 59.08 186.68 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
1.00000 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
56.327 56.327 1.390
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.318 4.170 1.320
Rmerge
_reflns.pdbx_Rsym_value _reflns_shell.Rmerge_I_obs
0.197 0.090 1.763
Rmeas
_reflns.pdbx_Rrim_I_all _reflns_shell.pdbx_Rrim_I_all
0.212 0.097 1.900
Rpim
_reflns.pdbx_Rpim_I_all _reflns_shell.pdbx_Rpim_I_all
0.055 0.025 0.552
Total number of observations
_reflns.pdbx_number_measured_all _reflns_shell.number_measured_all
1161283 40896 132914
Total number unique
_reflns.number_obs _reflns_shell.number_unique_all
79227 2831 11370
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
10.10 6.00 0.40
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
100.0 99.9 100.0
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
14.7 14.4 11.7
  CC(1/2) - - -

Refinement
PDB entry ID
_entry.id
5K4P
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2016-05-21
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
49.9 - 1.318 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1544 / 0.1776
Structure solution method
_refine.pdbx_method_to_determine_struct
SAD