Data quality metrics extracted from 5k3y.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5K3Y at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
SLS BEAMLINE X06DA
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
SLS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
X06DA
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2005-07-21
Detector
_diffrn_detector.type
DECTRIS PILATUS 2M
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.9801
Software
Data processing
_software.classification
MOSFLM
Data scaling
_software.classification
SCALA (3.2.5)
Phasing
_software.classification
MOLREP
Refinement
_software.classification
BUSTER-TNT (2.11.6)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 1 21 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
45.907 67.295 116.618 90.00 96.19 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
0.98010 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
44.151 45.644 1.580
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.497 4.740 1.500
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.115 0.062 0.607
Rmeas
_reflns.pdbx_Rrim_I_all
0.138 - -
  Rpim - - -
Total number of observations
_reflns.pdbx_number_measured_all
288940 - -
Total number unique
_reflns.number_obs
109777 - -
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
8.00 8.90 1.10
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
97.2 81.5 92.0
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
2.6 2.9 1.8
  CC(1/2) - - -

Refinement
PDB entry ID
_entry.id
5K3Y
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2016-05-20
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
32.0 - 1.600 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1800 / 0.2010