Data quality metrics extracted from 5k3d.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5K3D at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
ROTATING ANODE
Source details
_diffrn_source.type
BRUKER AXS MICROSTAR
Temperature [K]
_diffrn.ambient_temp
93
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2013-06-26
Detector
_diffrn_detector.type
BRUKER SMART 6000
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.5418
Software
Data reduction
_software.classification
PROTEUM PLUS
Data scaling
_software.classification
PROTEUM PLUS
Phasing
_software.classification
PHASER
Refinement
_software.classification
PHENIX (1.9_1692)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 1 21 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
41.772 79.677 85.291 90.00 102.45 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
1.54180 Å

Data quality metricsOverall
Low resolution limit [Å]
_reflns.d_resolution_low
33.900
High resolution limit [Å]
_reflns.d_resolution_high
1.450
Rmerge
_reflns.pdbx_Rmerge_I_obs
0.055
  Rmeas -
  Rpim -
  Total number of observations -
Total number unique
_reflns.number_obs
96439
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
49.70
Completeness [%]
_reflns.percent_possible_obs
99.9
Multiplicity
_reflns.pdbx_redundancy
3.2
  CC(1/2) -

Refinement
PDB entry ID
_entry.id
5K3D
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2016-05-19
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
33.9 - 1.450 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1830 / 0.2150
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
3R3U