Data quality metrics extracted from 5k2h.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5K2H at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
ELECTRON CRYSTALLOGRAPHY
Source type
_diffrn_source.source
ELECTRON MICROSCOPE
Source details
_diffrn_source.type
TECNAI F20 TEM
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CMOS
Collection date
_diffrn_detector.pdbx_collection_date
2016-02-03
Detector
_diffrn_detector.type
TVIPS F416 CMOS CAMERA
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.0251
Software
Data scaling
_software.classification
XSCALE (Wolfgang Kabsch)
Refinement
_software.classification
REFMAC (Garib N. Murshudov; garib@ysbl.york.ac.uk)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 21 21 21
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
23.16 4.93 40.51 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.02510 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
20.110 20.110 1.190
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.050 1.710 1.050
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.189 0.116 0.438
Rmeas
_reflns.pdbx_Rrim_I_all _reflns_shell.pdbx_Rrim_I_all
0.218 0.137 0.497
  Rpim - - -
Total number of observations
_reflns.pdbx_number_measured_all _reflns_shell.number_measured_obs
6795 1480 2204
Total number unique
_reflns.number_obs _reflns_shell.number_unique_obs
1836 427 572
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
4.18 7.47 2.26
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
72.7 67.5 75.1
  Multiplicity - - -
CC(1/2)
_reflns.pdbx_CC_half _reflns_shell.pdbx_CC_half
0.992 0.993 0.813

Refinement
PDB entry ID
_entry.id
5K2H
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2016-05-18
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
20.1 - 1.050 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1772 / 0.1856