Data quality metrics extracted from 5k2e.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5K2E at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
ELECTRON CRYSTALLOGRAPHY
Source type
_diffrn_source.source
ELECTRON MICROSCOPE
Source details
_diffrn_source.type
TECNAI F20 TEM
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CMOS
Collection date
_diffrn_detector.pdbx_collection_date
2016-02-03
Detector
_diffrn_detector.type
TVIPS F416 CMOS CAMERA
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.0251
Software
Data collection
_software.classification
DENZO (Zbyszek Otwinowski; hkl@hkl-xray.com)
Data scaling
_software.classification
SCALEPACK (Zbyszek Otwinowski; hkl@hkl-xray.com)
Refinement
_software.classification
REFMAC (Garib N. Murshudov; garib@ysbl.york.ac.uk)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 1 21 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
21.48 4.95 23.87 90.00 103.95 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
0.02510 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
90.000 90.000 1.080
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.000 1.710 1.000
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.211 0.154 0.362
  Rmeas - - -
  Rpim - - -
Total number of observations
_reflns.pdbx_number_measured_all
13199 - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_all
2712 597 460
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
4.10 - -
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
85.8 85.8 79.9
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
4.9 5.3 3.0
  CC(1/2) - - -

Refinement
PDB entry ID
_entry.id
5K2E
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2016-05-18
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
23.2 - 1.000 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1523 / 0.1943