Experiment | |
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Method _exptl.method | X-RAY DIFFRACTION The method used in the experiment. |
Experimental protocol _diffrn_radiation.pdbx_diffrn_protocol | SINGLE WAVELENGTH SINGLE WAVELENGTH, LAUE, or MAD. |
Source type _diffrn_source.source | SYNCHROTRON The general class of the radiation source. |
Source details _diffrn_source.type | APS BEAMLINE 24-ID-E The make, model or name of the source of radiation. |
Synchrotron site _diffrn_source.pdbx_synchrotron_site | APS Synchrotron site. |
Beamline _diffrn_source.pdbx_synchrotron_beamline | 24-ID-E Synchrotron beamline. |
Temperature [K] _diffrn.ambient_temp | 100 The mean temperature in kelvins at which the intensities were |
Detector technology _diffrn_detector.detector | PIXEL The general class of the radiation detector. |
Collection date _diffrn_detector.pdbx_collection_date | 2018-12-05 The date of data collection. |
Detector _diffrn_detector.type | DECTRIS EIGER X 16M The make, model or name of the detector device used. |
Wavelength(s) [Å] _diffrn_source.pdbx_wavelength_list | 0.9792 Comma separated list of wavelengths or wavelength range. |
Software | |
Data reduction _software.classification | xia2 The classification of the program according to its |
Data scaling _software.classification | xia2 The classification of the program according to its |
Phasing _software.classification | PHASER The classification of the program according to its |
Model building _software.classification | Coot The classification of the program according to its |
Refinement _software.classification | PHENIX (1.11.1_2575) The classification of the program according to its |
General information | |
Spacegroup name _symmetry.space_group_name_H-M | P 1 Hermann-Mauguin space-group symbol. Note that the |
Unit cell parameters _cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma} | 66.848 Unit-cell length a corresponding to the structure reported in 88.336 Unit-cell length b corresponding to the structure reported in 93.841 Unit-cell length c corresponding to the structure reported in 118.25 Unit-cell angle alpha of the reported structure in degrees. 87.05 Unit-cell angle beta of the reported structure in degrees. 106.71 Unit-cell angle gamma of the reported structure in degrees. |
Wavelength _diffrn_radiation_wavelength.wavelength | 0.97920 ÅThe radiation wavelength in angstroms. |
Data quality metrics | Overall | InnerShell | OuterShell |
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Low resolution limit [Å] _reflns.d_resolution_low _reflns_shell.d_res_low | 73.790 The largest value in angstroms for the interplanar spacings | 73.820 The highest value in angstroms for the interplanar spacings | 2.650 The highest value in angstroms for the interplanar spacings |
High resolution limit [Å] _reflns.d_resolution_high _reflns_shell.d_res_high | 2.600 The smallest value in angstroms for the interplanar spacings | 7.060 The smallest value in angstroms for the interplanar spacings | 2.600 The smallest value in angstroms for the interplanar spacings |
Rmerge | - | - | - |
Rmeas _reflns.pdbx_Rrim_I_all _reflns_shell.pdbx_Rrim_I_all | 0.190 The redundancy-independent merging R factor value Rrim, | 0.067 The redundancy-independent merging R factor value Rrim, | 1.211 The redundancy-independent merging R factor value Rrim, |
Rpim _reflns.pdbx_Rpim_I_all _reflns_shell.pdbx_Rpim_I_all | 0.097 The precision-indicating merging R factor value Rpim, | 0.034 The precision-indicating merging R factor value Rpim, | 0.617 The precision-indicating merging R factor value Rpim, |
Total number of observations _reflns_shell.number_measured_all | - | 9626 The total number of reflections measured for this | 8587 The total number of reflections measured for this |
Total number unique _reflns.number_obs _reflns_shell.number_unique_obs | 102625 The number of reflections in the REFLN list (not the DIFFRN_REFLN | 2579 The total number of measured reflections classified as 'observed' | 2266 The total number of measured reflections classified as 'observed' |
<I/σ(I)> _reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs | 5.60 The mean of the ratio of the intensities to their | 11.50 The ratio of the mean of the intensities of the reflections | 1.50 The ratio of the mean of the intensities of the reflections |
Completeness [%] _reflns.percent_possible_obs _reflns_shell.percent_possible_all | 93.8 The percentage of geometrically possible reflections represented | 94.5 The percentage of geometrically possible reflections represented | 83.3 The percentage of geometrically possible reflections represented |
Multiplicity _reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy | 3.8 Overall redundancy for this data set. | 3.7 Redundancy for the current shell. | 3.8 Redundancy for the current shell. |
CC(1/2) | - | - | - |
Refinement | |
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PDB entry ID _entry.id | 7K1H |
Deposition date _pdbx_database_status.recvd_initial_deposition_date | 2020-09-07 |
Resolution _refine.ls_d_res_low _refine.ls_d_res_high | 46.7 - 2.602 Å |
Rwork/Rfree _refine.ls_R_factor_R_work _refine.ls_R_factor_R_free | 0.2310 / 0.2752 |
Structure solution method _refine.pdbx_method_to_determine_struct | MOLECULAR REPLACEMENT |
Starting model (for MR) _refine.pdbx_starting_model | 5D41 |