Experiment | |
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Method _exptl.method | X-RAY DIFFRACTION The method used in the experiment. |
Experimental protocol _diffrn_radiation.pdbx_diffrn_protocol | SINGLE WAVELENGTH SINGLE WAVELENGTH, LAUE, or MAD. |
Source type _diffrn_source.source | SYNCHROTRON The general class of the radiation source. |
Source details _diffrn_source.type | SSRF BEAMLINE BL19U1 The make, model or name of the source of radiation. |
Synchrotron site _diffrn_source.pdbx_synchrotron_site | SSRF Synchrotron site. |
Beamline _diffrn_source.pdbx_synchrotron_beamline | BL19U1 Synchrotron beamline. |
Temperature [K] _diffrn.ambient_temp | 100 The mean temperature in kelvins at which the intensities were |
Detector technology _diffrn_detector.detector | PIXEL The general class of the radiation detector. |
Collection date _diffrn_detector.pdbx_collection_date | 2023-05-22 The date of data collection. |
Detector _diffrn_detector.type | DECTRIS PILATUS 6M The make, model or name of the detector device used. |
Wavelength(s) [Å] _diffrn_source.pdbx_wavelength_list | 0.979 Comma separated list of wavelengths or wavelength range. |
Software | |
Data reduction _software.classification | HKL-2000 The classification of the program according to its |
Data scaling _software.classification | HKL-2000 The classification of the program according to its |
Phasing _software.classification | PHENIX The classification of the program according to its |
Refinement _software.classification | PHENIX (1.18.2_3874: ???) The classification of the program according to its |
General information | |
Spacegroup name _symmetry.space_group_name_H-M | I 21 21 21 Hermann-Mauguin space-group symbol. Note that the |
Unit cell parameters _cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma} | 108.531 Unit-cell length a corresponding to the structure reported in 158.936 Unit-cell length b corresponding to the structure reported in 182.424 Unit-cell length c corresponding to the structure reported in 90.0 Unit-cell angle alpha of the reported structure in degrees. 90.0 Unit-cell angle beta of the reported structure in degrees. 90.0 Unit-cell angle gamma of the reported structure in degrees. |
Wavelength _diffrn_radiation_wavelength.wavelength | 0.97900 ÅThe radiation wavelength in angstroms. |
Data quality metrics | Overall | InnerShell | OuterShell |
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Low resolution limit [Å] _reflns.d_resolution_low _reflns_shell.d_res_low | 50.000 The largest value in angstroms for the interplanar spacings | 50.000 The highest value in angstroms for the interplanar spacings | 2.800 The highest value in angstroms for the interplanar spacings |
High resolution limit [Å] _reflns.d_resolution_high _reflns_shell.d_res_high | 2.750 The smallest value in angstroms for the interplanar spacings | 7.460 The smallest value in angstroms for the interplanar spacings | 2.750 The smallest value in angstroms for the interplanar spacings |
Rmerge _reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs | 0.095 The R value for merging intensities satisfying the observed | 0.031 The value of Rmerge(I) for reflections classified as 'observed' | 0.897 The value of Rmerge(I) for reflections classified as 'observed' |
Rmeas _reflns.pdbx_Rrim_I_all _reflns_shell.pdbx_Rrim_I_all | 0.105 The redundancy-independent merging R factor value Rrim, | 0.034 The redundancy-independent merging R factor value Rrim, | 1.004 The redundancy-independent merging R factor value Rrim, |
Rpim _reflns.pdbx_Rpim_I_all _reflns_shell.pdbx_Rpim_I_all | 0.043 The precision-indicating merging R factor value Rpim, | 0.014 The precision-indicating merging R factor value Rpim, | 0.436 The precision-indicating merging R factor value Rpim, |
Total number of observations _reflns.pdbx_number_measured_all | 216661 Total number of measured reflections. | - | - |
Total number unique _reflns.number_obs _reflns_shell.number_unique_obs | 40161 The number of reflections in the REFLN list (not the DIFFRN_REFLN | 2138 The total number of measured reflections classified as 'observed' | 1927 The total number of measured reflections classified as 'observed' |
<I/σ(I)> _reflns.pdbx_netI_over_sigmaI | 8.20 The mean of the ratio of the intensities to their | - | - |
Completeness [%] _reflns.percent_possible_obs _reflns_shell.percent_possible_all | 97.4 The percentage of geometrically possible reflections represented | 96.7 The percentage of geometrically possible reflections represented | 95.8 The percentage of geometrically possible reflections represented |
Multiplicity _reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy | 5.4 Overall redundancy for this data set. | 5.6 Redundancy for the current shell. | 4.9 Redundancy for the current shell. |
CC(1/2) _reflns.pdbx_CC_half _reflns_shell.pdbx_CC_half | 0.997 The Pearson's correlation coefficient expressed as a decimal value | 0.999 The Pearson's correlation coefficient expressed as a decimal value | 0.679 The Pearson's correlation coefficient expressed as a decimal value |
Refinement | |
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PDB entry ID _entry.id | 8JY0 |
Deposition date _pdbx_database_status.recvd_initial_deposition_date | 2023-07-02 |