Data quality metrics extracted from 4jyp.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 4JYP at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
ALS BEAMLINE 8.2.1
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
ALS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
8.2.1
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2012-09-28
Detector
_diffrn_detector.type
ADSC QUANTUM 315r
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.0
Software
Data collection
_software.classification
BOS
Data reduction
_software.classification
MOSFLM (Andrew G.W. Leslie; andrew@mrc-lmb.cam.ac.uk)
Data scaling
_software.classification
SCALA (3.3.16; 2010/01/06; Phil R. Evans; pre@mrc-lmb.cam.ac.uk)
Phasing
_software.classification
PHASER (2.4.0; Tue Dec 6 02:52:43 2011 (svn ); Randy J. Read; cimr-phaser@lists.cam.ac.uk)
Refinement
_software.classification
PHENIX (1.8.1_1168; Paul D. Adams; PDAdams@lbl.gov)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
50.69 53.21 55.77 89.49 89.76 63.84
Wavelength
_diffrn_radiation_wavelength.wavelength
1.00000 Å

Data quality metricsOverall
Low resolution limit [Å]
_reflns.d_resolution_low
26.488
High resolution limit [Å]
_reflns.d_resolution_high
1.300
Rmerge
_reflns.pdbx_Rsym_value
0.088
Rmeas
_reflns.pdbx_Rrim_I_all
0.109
Rpim
_reflns.pdbx_Rpim_I_all
0.064
Total number of observations
_reflns.pdbx_number_measured_all
261965
Total number unique
_reflns.number_obs
115956
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
6.70
Completeness [%]
_reflns.percent_possible_obs
90.1
Multiplicity
_reflns.pdbx_redundancy
2.3
  CC(1/2) -

Refinement
PDB entry ID
_entry.id
4JYP
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2013-03-31
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
26.5 - 1.300 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1688 / 0.1906