Data quality metrics extracted from 3jyc.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 3JYC at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
APS BEAMLINE 24-ID-C
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
APS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
24-ID-C
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2009-03-01
Detector
_diffrn_detector.type
ADSC QUANTUM 315
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.97949
Software
Data collection
_software.classification
ADSC (Quantum)
Data reduction
_software.classification
DENZO
Data scaling
_software.classification
SCALEPACK
Phasing
_software.classification
MOLREP
Refinement
_software.classification
CNS (1.2)
General information
Spacegroup name
_symmetry.space_group_name_H-M
I 4
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
84.018 84.018 196.121 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97949 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
50.000 3.210
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
3.100 3.100
Rmerge
_reflns.pdbx_Rsym_value _reflns_shell.pdbx_Rsym_value
0.068 0.736
  Rmeas - -
  Rpim - -
  Total number of observations - -
Total number unique
_reflns.number_obs
12122 -
<I/σ(I)>
_reflns_shell.meanI_over_sigI_obs
- 2.30
  Completeness [%] - -
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
5.4 4.6
  CC(1/2) - -

Refinement
PDB entry ID
_entry.id
3JYC
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2009-09-21
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
49.0 - 3.110 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2420 / 0.2700
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
PDB Entry: 1U4F