Data quality metrics extracted from 3jy9.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 3JY9 at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
ALS BEAMLINE 5.0.2
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
ALS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
5.0.2
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2005-12-21
Detector
_diffrn_detector.type
ADSC QUANTUM 315
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.00
Software
Data collection
_software.classification
BOS
Data reduction
_software.classification
d*TREK
Data scaling
_software.classification
d*TREK (9.9.3D; Oct 9 2008; Jim W. Pflugrath; Jim.Pflugrath@Rigaku.com)
Phasing
_software.classification
REFMAC
Refinement
_software.classification
REFMAC (Garib N. Murshudov; garib@ysbl.york.ac.uk)
General information
Spacegroup name
_symmetry.space_group_name_H-M
C 2 2 21
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
95.103 101.257 68.488 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
1.00000 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
47.550 2.180
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.100 2.100
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.054 0.240
  Rmeas - -
  Rpim - -
Total number of observations
_reflns_shell.number_measured_all
- 3433
Total number unique
_reflns.number_obs _reflns_shell.number_unique_all
18628 1671
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
12.20 2.50
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
94.7 86.1
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
3.7 2.0
  CC(1/2) - -

Refinement
PDB entry ID
_entry.id
3JY9
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2009-09-21
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
20.0 - 2.100 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1950 / 0.2710
Structure solution method
_refine.pdbx_method_to_determine_struct
FOURIER SYNTHESIS
Starting model
_refine.pdbx_starting_model
previous determined liganded structure