Data quality metrics extracted from 6jqy.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 6JQY at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
RRCAT INDUS-2 BEAMLINE PX-BL21
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
RRCAT INDUS-2
Beamline
_diffrn_source.pdbx_synchrotron_beamline
PX-BL21
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
IMAGE PLATE
Collection date
_diffrn_detector.pdbx_collection_date
2018-09-28
Detector
_diffrn_detector.type
MARRESEARCH
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.97949
Software
Data reduction
_software.classification
XDS
Data scaling
_software.classification
SCALA
Phasing
_software.classification
PHASER
Refinement
_software.classification
PHENIX (1.11.1_2575: ???)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 1 21 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
38.043 50.548 42.623 90.00 116.13 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97949 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
38.267 1.730
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.643 1.640
Rmerge
_reflns.pdbx_Rsym_value _reflns_shell.Rmerge_I_obs
0.045 0.608
Rmeas
_reflns.pdbx_Rrim_I_all
0.052 -
Rpim
_reflns.pdbx_Rpim_I_all _reflns_shell.pdbx_Rpim_I_all
0.025 0.353
  Total number of observations - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_obs
17661 9093
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
18.10 2.40
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
99.2 95.1
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
4.1 3.7
CC(1/2)
_reflns_shell.pdbx_CC_half
- 0.849

Refinement
PDB entry ID
_entry.id
6JQY
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2019-04-02
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
21.3 - 1.643 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1952 / 0.2321
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
4ZLX