Data quality metrics extracted from 5jpr.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5JPR at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Method
_exptl.method
NEUTRON DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
ROTATING ANODE
Source details
_diffrn_source.type
RIGAKU MICROMAX-007 HF
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
ILL
Beamline
_diffrn_source.pdbx_synchrotron_beamline
LADI III
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2015-10-20
Detector
_diffrn_detector.type
RIGAKU SATURN 944+
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.5418
Software
Data reduction
_software.classification
iMOSFLM
Data scaling
_software.classification
Aimless
Phasing
_software.classification
PHASER
Refinement
_software.classification
PHENIX (1.7.3_928)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 42 21 2
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
82.095 82.095 75.162 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
3.200004.200001.54180 Å

Data quality metricsOverall
Low resolution limit [Å]
_reflns.d_resolution_low
40.000
High resolution limit [Å]
_reflns.d_resolution_high
2.200
Rmerge
_reflns.pdbx_Rmerge_I_obs
0.180
  Rmeas -
  Rpim -
  Total number of observations -
Total number unique
_reflns.number_obs
9220
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
7.00
Completeness [%]
_reflns.percent_possible_obs
69.8
Multiplicity
_reflns.pdbx_redundancy
4.0
  CC(1/2) -

Refinement
PDB entry ID
_entry.id
5JPR
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2016-05-04
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
36.7 - 2.202 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2364 / 0.3104
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
2XIF