Data quality metrics extracted from 1jpd.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 1JPD at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
APS BEAMLINE 19-ID
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
APS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
19-ID
Temperature [K]
_diffrn.ambient_temp
113
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
1999-12-01
Detector
_diffrn_detector.type
CUSTOM-MADE
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.70008
Software
Data reduction
_software.classification
DENZO
Data scaling
_software.classification
SCALEPACK
Phasing
_software.classification
SOLVE
Refinement
_software.classification
CNS (1.0)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 41 21 2
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
84.203 84.203 158.881 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.70008 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
30.000 2.690
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.600 2.600
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.053 0.286
  Rmeas - -
  Rpim - -
  Total number of observations - -
Total number unique
_reflns.number_obs
17409 -
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
22.10 9.10
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
95.3 97.0
Multiplicity
_reflns.pdbx_redundancy
5.8 -
  CC(1/2) - -

Refinement
PDB entry ID
_entry.id
1JPD
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2001-08-01
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
20.4 - 2.600 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2090 / 0.2450
Structure solution method
_refine.pdbx_method_to_determine_struct
MAD