Data quality metrics extracted from 5jnb.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5JNB at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
SLS BEAMLINE X10SA
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
SLS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
X10SA
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2015-06-26
Detector
_diffrn_detector.type
DECTRIS PILATUS 6M-F
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.999
Software
Data reduction
_software.classification
XDS
Data scaling
_software.classification
XDS
Phasing
_software.classification
PHENIX
Refinement
_software.classification
PHENIX (1.9_1692)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
65.347 86.435 91.907 89.88 93.13 90.22
Wavelength
_diffrn_radiation_wavelength.wavelength
0.99900 Å

Data quality metricsOverall
Low resolution limit [Å]
_reflns.d_resolution_low
46.260
High resolution limit [Å]
_reflns.d_resolution_high
2.486
Rmerge
_reflns.pdbx_Rsym_value
0.088
  Rmeas -
  Rpim -
  Total number of observations -
Total number unique
_reflns.number_obs
135156
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
8.80
Completeness [%]
_reflns.percent_possible_obs
95.6
Multiplicity
_reflns.pdbx_redundancy
2.5
CC(1/2)
_reflns.pdbx_CC_half
0.993

Refinement
PDB entry ID
_entry.id
5JNB
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2016-04-29
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
46.3 - 2.486 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1919 / 0.2422
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
4ZRL