Data quality metrics extracted from 2jdk.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 2JDK at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
ESRF BEAMLINE ID14-2
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
ESRF
Beamline
_diffrn_source.pdbx_synchrotron_beamline
ID14-2
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2005-12-12
Detector
_diffrn_detector.type
ADSC CCD
Software
Data reduction
_software.classification
MOSFLM
Data scaling
_software.classification
SCALA
Refinement
_software.classification
REFMAC (5.2.0019)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 1 21 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
52.611 73.078 54.501 90.00 94.35 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
0.93300 Å

Data quality metricsOverall
Low resolution limit [Å]
_reflns.d_resolution_low
22.300
High resolution limit [Å]
_reflns.d_resolution_high
1.100
Rmerge
_reflns.pdbx_Rmerge_I_obs
0.050
  Rmeas -
  Rpim -
  Total number of observations -
Total number unique
_reflns.number_obs
165425
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
18.70
Completeness [%]
_reflns.percent_possible_obs
99.4
Multiplicity
_reflns.pdbx_redundancy
5.0
  CC(1/2) -

Refinement
PDB entry ID
_entry.id
2JDK
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2007-01-10
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
54.3 - 1.100 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1120 / 0.1340
Structure solution method
_refine.pdbx_method_to_determine_struct
OTHER
Starting model
_refine.pdbx_starting_model
NONE