Data quality metrics extracted from 2jd7.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 2JD7 at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
ESRF BEAMLINE BM14
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
ESRF
Beamline
_diffrn_source.pdbx_synchrotron_beamline
BM14
Temperature [K]
_diffrn.ambient_temp
100.0
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2006-06-25
Detector
_diffrn_detector.type
MARRSEARCH
Software
Data reduction
_software.classification
MOSFLM
Data scaling
_software.classification
SCALA
Refinement
_software.classification
REFMAC (5.3.0021)
General information
Spacegroup name
_symmetry.space_group_name_H-M
C 2 2 21
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
254.301 342.878 266.221 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
1.45850 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
42.000 2.950
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.800 2.800
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.080 0.350
  Rmeas - -
  Rpim - -
  Total number of observations - -
Total number unique
_reflns.number_obs
280407 -
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
8.20 2.00
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
99.1 94.1
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
3.6 2.6
  CC(1/2) - -

Refinement
PDB entry ID
_entry.id
2JD7
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2007-01-05
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
204.1 - 2.800 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1990 / 0.2500
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
REFINED 2JD6 COORDINATES