Data quality metrics extracted from 1jd6.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 1JD6 at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
ROTATING ANODE
Source details
_diffrn_source.type
RIGAKU RU200
Temperature [K]
_diffrn.ambient_temp
100.0
Detector technology
_diffrn_detector.detector
IMAGE PLATE
Collection date
_diffrn_detector.pdbx_collection_date
2001-01-08
Detector
_diffrn_detector.type
RIGAKU RAXIS IV
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.5418
Software
Data reduction
_software.classification
DENZO
Data scaling
_software.classification
SCALEPACK
Phasing
_software.classification
AMoRE
Refinement
_software.classification
X-PLOR (3.1)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 65 2 2
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
62.7 62.7 130.7 90.0 90.0 120.0
Wavelength
_diffrn_radiation_wavelength.wavelength
1.54180 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
99.000 2.800
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.700 2.700
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.133 0.043
  Rmeas - -
  Rpim - -
  Total number of observations - -
Total number unique
_reflns.number_obs
4535 -
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
25.00 -
Completeness [%]
_reflns.percent_possible_obs
98.3 -
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
19.0 12.0
  CC(1/2) - -

Refinement
PDB entry ID
_entry.id
1JD6
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2001-06-12
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
20.0 - 2.700 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2170 / 0.2870
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
WARNING: no starting model (for MR) given