Data quality metrics extracted from 5jcv.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5JCV at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
APS BEAMLINE 19-ID
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
APS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
19-ID
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2015-12-18
Detector
_diffrn_detector.type
ADSC QUANTUM 315r
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.9792
Software
Data collection
_software.classification
SBC-Collect
Data reduction
_software.classification
HKL-3000
Data scaling
_software.classification
HKL-3000
Phasing
_software.classification
HKL-3000
Refinement #1
_software.classification
REFMAC (5.8.0069)
Refinement #2
_software.classification
PHENIX (1.9-1692)
General information
Spacegroup name
_symmetry.space_group_name_H-M
I 41 2 2
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
70.155 70.155 224.471 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97920 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
33.600 2.270
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.230 2.230
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.087 0.890
  Rmeas - -
  Rpim - -
  Total number of observations - -
Total number unique
_reflns.number_obs
14055 -
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
36.40 2.88
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
99.2 100.0
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
10.9 10.8
  CC(1/2) - -

Refinement
PDB entry ID
_entry.id
5JCV
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2016-04-15
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
33.6 - 2.230 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2066 / 0.2487
Structure solution method
_refine.pdbx_method_to_determine_struct
SAD