Data quality metrics extracted from 5j9p.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5J9P at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
ALS BEAMLINE 4.2.2
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
ALS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
4.2.2
Temperature [K]
_diffrn.ambient_temp
80
Detector technology
_diffrn_detector.detector
CMOS
Collection date
_diffrn_detector.pdbx_collection_date
2014-02-09
Detector
_diffrn_detector.type
RDI CMOS_8M
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1
Software
Data reduction
_software.classification
XDS
Data scaling
_software.classification
SCALA (3.3.21)
Phasing
_software.classification
PHASER
Refinement
_software.classification
PHENIX (1.9_1692)
General information
Spacegroup name
_symmetry.space_group_name_H-M
I 4
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
155.695 155.695 74.791 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
1.00000 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
50.962 50.962 3.000
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.850 9.010 2.850
Rmerge
_reflns.pdbx_Rsym_value _reflns_shell.Rmerge_I_obs
0.188 0.034 1.976
Rmeas
_reflns.pdbx_Rrim_I_all _reflns_shell.pdbx_Rrim_I_all
0.202 0.037 2.132
Rpim
_reflns.pdbx_Rpim_I_all _reflns_shell.pdbx_Rpim_I_all
0.073 0.014 0.793
Total number of observations
_reflns.pdbx_number_measured_all _reflns_shell.number_measured_all
160009 5023 22269
Total number unique
_reflns.number_obs _reflns_shell.number_unique_all
21104 708 3064
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
11.70 17.10 0.40
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
100.0 99.6 100.0
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
7.6 7.1 7.3
  CC(1/2) - - -

Refinement
PDB entry ID
_entry.id
5J9P
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2016-04-10
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
42.6 - 2.850 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2167 / 0.2664
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
WARNING: no starting model (for MR) given