Data quality metrics extracted from 4j9y.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 4J9Y at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
ALS BEAMLINE 12.3.1
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
ALS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
12.3.1
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2011-12-08
Detector
_diffrn_detector.type
ADSC QUANTUM 315r
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.12
Software
Data scaling
_software.classification
SCALA (3.3.20; 2011/05/18; Phil R. Evans; pre@mrc-lmb.cam.ac.uk)
Refinement
_software.classification
PHENIX (1.7.3_928; Paul D. Adams; PDAdams@lbl.gov)
General information
Spacegroup name
_symmetry.space_group_name_H-M
C 1 2 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
77.63 66.82 64.83 90.00 94.48 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
1.12000 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
38.879 38.879 1.550
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.510 6.750 1.510
Rmerge
_reflns.pdbx_Rsym_value _reflns_shell.Rmerge_I_obs
0.035 0.018 0.682
  Rmeas - - -
  Rpim - - -
Total number of observations
_reflns_shell.number_measured_all
- 2215 19146
Total number unique
_reflns.number_obs _reflns_shell.number_unique_all
49769 473 3595
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
24.10 36.10 1.10
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
96.3 78.2 94.0
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
5.3 4.7 5.3
  CC(1/2) - - -

Refinement
PDB entry ID
_entry.id
4J9Y
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2013-02-17
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
38.9 - 1.510 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1827 / 0.2163
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
WARNING: no starting model (for MR) given