Experiment | |
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Method _exptl.method | X-RAY DIFFRACTION The method used in the experiment. |
Experimental protocol _diffrn_radiation.pdbx_diffrn_protocol | SINGLE WAVELENGTH SINGLE WAVELENGTH, LAUE, or MAD. |
Source type _diffrn_source.source | SYNCHROTRON The general class of the radiation source. |
Source details _diffrn_source.type | SSRL BEAMLINE BL12-2 The make, model or name of the source of radiation. |
Synchrotron site _diffrn_source.pdbx_synchrotron_site | SSRL Synchrotron site. |
Beamline _diffrn_source.pdbx_synchrotron_beamline | BL12-2 Synchrotron beamline. |
Temperature [K] _diffrn.ambient_temp | 296 The mean temperature in kelvins at which the intensities were |
Detector technology _diffrn_detector.detector | PIXEL The general class of the radiation detector. |
Collection date _diffrn_detector.pdbx_collection_date | 2012-05-30 The date of data collection. |
Detector _diffrn_detector.type | DECTRIS PILATUS 6M The make, model or name of the detector device used. |
Software | |
Data reduction _software.classification | XDS The classification of the program according to its |
Data scaling _software.classification | XSCALE (March 15, 2012; Wolfgang Kabsch) The classification of the program according to its |
Phasing _software.classification | REFMAC The classification of the program according to its |
Model building _software.classification | MolProbity (3beta29; D.C. & J.S. Richardson lab; molprobity@kinemage.biochem.duke.edu) The classification of the program according to its |
Refinement _software.classification | REFMAC (Garib N. Murshudov; garib@ysbl.york.ac.uk) The classification of the program according to its |
General information | |
Spacegroup name _symmetry.space_group_name_H-M | P 21 21 21 Hermann-Mauguin space-group symbol. Note that the |
Unit cell parameters _cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma} | 44.617 Unit-cell length a corresponding to the structure reported in 52.829 Unit-cell length b corresponding to the structure reported in 85.652 Unit-cell length c corresponding to the structure reported in 90.0 Unit-cell angle alpha of the reported structure in degrees. 90.0 Unit-cell angle beta of the reported structure in degrees. 90.0 Unit-cell angle gamma of the reported structure in degrees. |
Wavelength _diffrn_radiation_wavelength.wavelength | 0.97950 ÅThe radiation wavelength in angstroms. |
Data quality metrics | Overall | InnerShell | OuterShell |
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Low resolution limit [Å] _reflns.d_resolution_low _reflns_shell.d_res_low | 28.551 The largest value in angstroms for the interplanar spacings | 28.550 The highest value in angstroms for the interplanar spacings | 1.140 The highest value in angstroms for the interplanar spacings |
High resolution limit [Å] _reflns.d_resolution_high _reflns_shell.d_res_high | 1.110 The smallest value in angstroms for the interplanar spacings | 4.970 The smallest value in angstroms for the interplanar spacings | 1.110 The smallest value in angstroms for the interplanar spacings |
Rmerge _reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs | 0.055 The R value for merging intensities satisfying the observed | 0.033 The value of Rmerge(I) for reflections classified as 'observed' | 1.016 The value of Rmerge(I) for reflections classified as 'observed' |
Rmeas | - | - | - |
Rpim | - | - | - |
Total number of observations _reflns_shell.number_measured_obs | - | 9542 The number of reflections classified as 'observed' | 17008 The number of reflections classified as 'observed' |
Total number unique _reflns.number_obs _reflns_shell.number_unique_obs | 75696 The number of reflections in the REFLN list (not the DIFFRN_REFLN | 917 The total number of measured reflections classified as 'observed' | 3368 The total number of measured reflections classified as 'observed' |
<I/σ(I)> _reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs | 18.40 The mean of the ratio of the intensities to their | 67.30 The ratio of the mean of the intensities of the reflections | 2.20 The ratio of the mean of the intensities of the reflections |
Completeness [%] _reflns.percent_possible_obs | 94.2 The percentage of geometrically possible reflections represented | - | - |
Multiplicity _reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy | 9.7 Overall redundancy for this data set. | 10.4 Redundancy for the current shell. | 5.0 Redundancy for the current shell. |
CC(1/2) | - | - | - |
Refinement | |
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PDB entry ID _entry.id | 4J5O |
Deposition date _pdbx_database_status.recvd_initial_deposition_date | 2013-02-08 |
Resolution _refine.ls_d_res_low _refine.ls_d_res_high | 28.6 - 1.110 Å |
Rwork/Rfree _refine.ls_R_factor_R_work _refine.ls_R_factor_R_free | 0.1126 / 0.1289 |
Structure solution method _refine.pdbx_method_to_determine_struct | MOLECULAR REPLACEMENT |
Starting model (for MR) _refine.pdbx_starting_model | 3s6e |