Data quality metrics extracted from 6j2m.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 6J2M at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
RRCAT INDUS-2 BEAMLINE PX-BL21
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
RRCAT INDUS-2
Beamline
_diffrn_source.pdbx_synchrotron_beamline
PX-BL21
Temperature [K]
_diffrn.ambient_temp
103
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2016-12-04
Detector
_diffrn_detector.type
MARMOSAIC 225 mm CCD
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.9794
Software
Data reduction
_software.classification
iMOSFLM (7.1.1)
Data scaling
_software.classification
Aimless
Phasing
_software.classification
MOLREP
Refinement
_software.classification
REFMAC (5.8.0135)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 21 21 21
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
43.04 48.19 59.50 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97940 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
28.250 1.150
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.130 1.130
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.064 0.290
Rmeas
_reflns.pdbx_Rrim_I_all _reflns_shell.pdbx_Rrim_I_all
0.069 0.313
Rpim
_reflns.pdbx_Rpim_I_all _reflns_shell.pdbx_Rpim_I_all
0.025 0.118
  Total number of observations - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_obs
46611 15387
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
15.40 5.00
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
99.3 98.5
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
7.2 6.8
CC(1/2)
_reflns.pdbx_CC_half _reflns_shell.pdbx_CC_half
0.998 0.957

Refinement
PDB entry ID
_entry.id
6J2M
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2019-01-01
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
28.2 - 1.130 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1249 / 0.1454
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
3UQA