Data quality metrics extracted from 6j0y.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 6J0Y at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
APS BEAMLINE 21-ID-D
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
APS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
21-ID-D
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2015-05-31
Detector
_diffrn_detector.type
MARMOSAIC 300 mm CCD
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.97855
Software
Data scaling
_software.classification
Aimless (0.3.11)
Model building
_software.classification
Coot
Refinement
_software.classification
PHENIX (1.13_2998)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
63.45 77.95 78.38 89.95 79.15 83.97
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97855 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
55.150 55.150 1.840
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.790 8.010 1.790
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.046 0.030 0.672
Rmeas
_reflns.pdbx_Rrim_I_all _reflns_shell.pdbx_Rrim_I_all
0.053 0.036 0.777
Rpim
_reflns.pdbx_Rpim_I_all _reflns_shell.pdbx_Rpim_I_all
0.027 0.019 0.389
Total number of observations
_reflns.pdbx_number_measured_all _reflns_shell.number_measured_all
532667 5442 39059
Total number unique
_reflns.number_obs _reflns_shell.number_unique_obs
134886 1507 9805
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.pdbx_netI_over_sigmaI_obs
15.00 39.10 2.10
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
97.6 97.5 96.1
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
3.9 3.6 4.0
CC(1/2)
_reflns.pdbx_CC_half _reflns_shell.pdbx_CC_half
0.999 0.997 0.847

Refinement
PDB entry ID
_entry.id
6J0Y
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2018-12-27
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
35.9 - 1.800 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1593 / 0.1850
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
6J0V