Data quality metrics extracted from 6ivy.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 6IVY at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
ROTATING ANODE
Source details
_diffrn_source.type
Cu FINE FOCUS
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2018-03-05
Detector
_diffrn_detector.type
OXFORD ONYX CCD
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.54
Software
Data reduction
_software.classification
CrysalisPro
Data scaling
_software.classification
SCALA
Phasing
_software.classification
PHASER
Refinement
_software.classification
PHENIX (1.11.1_2575)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 1 21 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
51.577 104.600 58.758 90.000 110.192 90.000
Wavelength
_diffrn_radiation_wavelength.wavelength
1.54000 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
25.075 2.070
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.900 2.000
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.099 0.400
Rmeas
_reflns.pdbx_Rrim_I_all
0.110 -
Rpim
_reflns.pdbx_Rpim_I_all _reflns_shell.pdbx_Rpim_I_all
0.047 0.293
  Total number of observations - -
Total number unique
_reflns.number_obs
39097 -
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
11.20 -
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
99.0 97.5
Multiplicity
_reflns.pdbx_redundancy
5.0 -
CC(1/2)
_reflns_shell.pdbx_CC_half
- 0.754

Refinement
PDB entry ID
_entry.id
6IVY
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2018-12-04
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
25.1 - 2.000 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1752 / 0.2212
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
3OD7