Data quality metrics extracted from 3ivd.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 3IVD at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
NSLS BEAMLINE X29A
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
NSLS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
X29A
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2009-03-25
Detector
_diffrn_detector.type
ADSC QUANTUM 315
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.9793
Software
Data collection
_software.classification
CBASS
Data reduction #1
_software.classification
DENZO (Zbyszek Otwinowski; hkl@hkl-xray.com)
Data reduction #2
_software.classification
HKL-2000
Data scaling
_software.classification
SCALEPACK (Zbyszek Otwinowski; hkl@hkl-xray.com)
Phasing #1
_software.classification
SHELXD
Phasing #2
_software.classification
CCP4
Model building
_software.classification
SHELXE
Refinement
_software.classification
REFMAC (Garib N. Murshudov; garib@ysbl.york.ac.uk)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
47.597 67.281 86.417 74.04 77.55 83.76
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97930 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
50.000 50.000 1.970
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.900 4.090 1.900
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.107 0.062 0.462
  Rmeas - - -
  Rpim - - -
  Total number of observations - - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_all
76172 7827 6688
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
7.10 - -
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
96.3 99.0 84.4
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
3.6 3.7 2.8
  CC(1/2) - - -

Refinement
PDB entry ID
_entry.id
3IVD
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2009-08-31
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
50.0 - 1.900 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1670 / 0.2100
Structure solution method
_refine.pdbx_method_to_determine_struct
SAD