Data quality metrics extracted from 8idm.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 8IDM at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
SSRF BEAMLINE BL02U1
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
SSRF
Beamline
_diffrn_source.pdbx_synchrotron_beamline
BL02U1
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2021-07-09
Detector
_diffrn_detector.type
DECTRIS EIGER2 S 9M
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.987
Software
Data reduction
_software.classification
HKL-2000
Data scaling
_software.classification
HKL-2000
Phasing
_software.classification
PHASER
Refinement
_software.classification
PHENIX (1.18.2_3874)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 64 2 2
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
104.440 104.440 318.223 90.0 90.0 120.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.98700 Å

Data quality metricsOverall
Low resolution limit [Å]
_reflns.d_resolution_low
16.220
High resolution limit [Å]
_reflns.d_resolution_high
3.590
  Rmerge -
  Rmeas -
  Rpim -
  Total number of observations -
Total number unique
_reflns.number_obs
12591
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
14.20
Completeness [%]
_reflns.percent_possible_obs
97.9
Multiplicity
_reflns.pdbx_redundancy
16.0
CC(1/2)
_reflns.pdbx_CC_half
1.000

Refinement
PDB entry ID
_entry.id
8IDM
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2023-02-13
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
16.2 - 3.590 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2534 / 0.2726
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
WARNING: no starting model (for MR) given