Data quality metrics extracted from 4i9k.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 4I9K at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
APS BEAMLINE 24-ID-C
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
APS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
24-ID-C
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2010-06-01
Detector
_diffrn_detector.type
ADSC QUANTUM 315
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.979
Software
Data collection
_software.classification
ADSC (Quantum)
Data reduction
_software.classification
HKL-2000
Data scaling
_software.classification
SCALA (3.3.16; 2010/01/06; Phil R. Evans; pre@mrc-lmb.cam.ac.uk)
Phasing
_software.classification
PHASER
Refinement
_software.classification
PHENIX (1.5_2; Paul D. Adams; PDAdams@lbl.gov)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 63
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
119.43 119.43 111.72 90.0 90.0 120.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97900 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
59.715 59.715 4.750
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
4.506 14.250 4.506
Rmerge
_reflns.pdbx_Rsym_value _reflns_shell.Rmerge_I_obs
0.186 0.144 0.272
  Rmeas - - -
  Rpim - - -
Total number of observations
_reflns_shell.number_measured_all
- 1019 5062
Total number unique
_reflns.number_obs _reflns_shell.number_unique_all
5160 172 770
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
5.50 2.60 2.10
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
94.6 91.9 95.7
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
6.4 5.9 6.6
  CC(1/2) - - -

Refinement
PDB entry ID
_entry.id
4I9K
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2012-12-05
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
49.1 - 5.000 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.3163 / 0.3544
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
PDB ENTRY 3HWS