Data quality metrics extracted from 5hvd.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5HVD at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
SOLEIL BEAMLINE PROXIMA 2
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
SOLEIL
Beamline
_diffrn_source.pdbx_synchrotron_beamline
PROXIMA 2
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2015-11-08
Detector
_diffrn_detector.type
ADSC QUANTUM 315r
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.97718
Software
Data reduction
_software.classification
XDS (Oct 15, 2015)
Data scaling
_software.classification
XDS (Oct 15, 2015)
Phasing
_software.classification
PHASER (2.5.7)
Refinement
_software.classification
BUSTER (2.10.2)
General information
Spacegroup name
_symmetry.space_group_name_H-M
I 4 2 2
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
109.58 109.58 209.71 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97718 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
26.920 2.720
High resolution limit [Å]
_reflns_shell.d_res_high
- 2.600
  - -
Rmerge
_reflns_shell.Rmerge_I_obs
- 3.600
  Rmeas - -
  Rpim - -
  Total number of observations - -
  Total number unique - -
<I/σ(I)>
_reflns_shell.meanI_over_sigI_obs
- 1.40
Completeness [%]
_reflns_shell.percent_possible_all
- 99.7
Multiplicity
_reflns_shell.pdbx_redundancy
- 45.5
  CC(1/2) - -

Refinement
PDB entry ID
_entry.id
5HVD
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2016-01-28
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
26.9 - 2.600 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1925 / 0.2139
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
3rvy