| Experiment | |
|---|---|
Method _exptl.method | X-RAY DIFFRACTION The method used in the experiment. |
Experimental protocol _diffrn_radiation.pdbx_diffrn_protocol | SINGLE WAVELENGTH SINGLE WAVELENGTH, LAUE, or MAD. |
Source type _diffrn_source.source | SYNCHROTRON The general class of the radiation source. |
Source details _diffrn_source.type | ALS BEAMLINE 8.3.1 The make, model or name of the source of radiation. |
Synchrotron site _diffrn_source.pdbx_synchrotron_site | ALS Synchrotron site. |
Beamline _diffrn_source.pdbx_synchrotron_beamline | 8.3.1 Synchrotron beamline. |
Temperature [K] _diffrn.ambient_temp | 100 The mean temperature in kelvins at which the intensities were |
Detector technology _diffrn_detector.detector | PIXEL The general class of the radiation detector. |
Collection date _diffrn_detector.pdbx_collection_date | 2023-03-08 The date of data collection. |
Detector _diffrn_detector.type | DECTRIS PILATUS3 6M The make, model or name of the detector device used. |
Wavelength(s) [Å] _diffrn_source.pdbx_wavelength_list | 1.11583 Comma separated list of wavelengths or wavelength range. |
| Software | |
Data reduction _software.classification | XDS (Jun 30, 2023; Jun. 30, 2023; Wolfgang Kabsch; Wolfgang.Kabsch@mpimf-heidelberg.mpg.de) The classification of the program according to its |
Data scaling _software.classification | Aimless (0.8.2; 14/06/24; Phil Evans) The classification of the program according to its |
Phasing _software.classification | PHASER (2.8.3; May 17, 2020; Randy J. Read; cimr-phaser@lists.cam.ac.uk) The classification of the program according to its |
Refinement _software.classification | PHENIX (1.20.1_4487; Paul D. Adams; PDAdams@lbl.gov) The classification of the program according to its |
| General information | |
Spacegroup name _symmetry.space_group_name_H-M | P 1 21 1 Hermann-Mauguin space-group symbol. Note that the |
Unit cell parameters _cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma} | 26.301 Unit-cell length a corresponding to the structure reported in 47.278 Unit-cell length b corresponding to the structure reported in 46.588 Unit-cell length c corresponding to the structure reported in 90.00 Unit-cell angle alpha of the reported structure in degrees. 103.56 Unit-cell angle beta of the reported structure in degrees. 90.00 Unit-cell angle gamma of the reported structure in degrees. |
Wavelength _diffrn_radiation_wavelength.wavelength | 1.11583 ÅThe radiation wavelength in angstroms. |
| Data quality metrics | Overall | InnerShell | OuterShell |
|---|---|---|---|
Low resolution limit [Å] _reflns.d_resolution_low _reflns_shell.d_res_low | 47.280 The largest value in angstroms for the interplanar spacings | 47.280 The highest value in angstroms for the interplanar spacings | 1.610 The highest value in angstroms for the interplanar spacings |
High resolution limit [Å] _reflns.d_resolution_high _reflns_shell.d_res_high | 1.580 The smallest value in angstroms for the interplanar spacings | 8.650 The smallest value in angstroms for the interplanar spacings | 1.580 The smallest value in angstroms for the interplanar spacings |
Rmerge _reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs | 0.105 The R value for merging intensities satisfying the observed | 0.058 The value of Rmerge(I) for reflections classified as 'observed' | 0.820 The value of Rmerge(I) for reflections classified as 'observed' |
Rmeas _reflns.pdbx_Rrim_I_all _reflns_shell.pdbx_Rrim_I_all | 0.130 The redundancy-independent merging R factor value Rrim, | 0.072 The redundancy-independent merging R factor value Rrim, | 1.048 The redundancy-independent merging R factor value Rrim, |
Rpim _reflns.pdbx_Rpim_I_all _reflns_shell.pdbx_Rpim_I_all | 0.076 The precision-indicating merging R factor value Rpim, | 0.042 The precision-indicating merging R factor value Rpim, | 0.643 The precision-indicating merging R factor value Rpim, |
Total number of observations _reflns.pdbx_number_measured_all _reflns_shell.number_measured_all | 40701 Total number of measured reflections. | 274 The total number of reflections measured for this | 1657 The total number of reflections measured for this |
Total number unique _reflns.number_obs _reflns_shell.number_unique_obs | 14953 The number of reflections in the REFLN list (not the DIFFRN_REFLN | 98 The total number of measured reflections classified as 'observed' | 730 The total number of measured reflections classified as 'observed' |
<I/σ(I)> _reflns.pdbx_netI_over_sigmaI _reflns_shell.pdbx_netI_over_sigmaI_obs | 6.00 The mean of the ratio of the intensities to their | 18.30 The mean of the ratio of the intensities to their | 0.90 The mean of the ratio of the intensities to their |
Completeness [%] _reflns.percent_possible_obs _reflns_shell.percent_possible_all | 97.6 The percentage of geometrically possible reflections represented | 94.3 The percentage of geometrically possible reflections represented | 96.0 The percentage of geometrically possible reflections represented |
Multiplicity _reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy | 2.7 Overall redundancy for this data set. | 2.8 Redundancy for the current shell. | 2.3 Redundancy for the current shell. |
CC(1/2) _reflns.pdbx_CC_half _reflns_shell.pdbx_CC_half | 0.990 The Pearson's correlation coefficient expressed as a decimal value | 0.992 The Pearson's correlation coefficient expressed as a decimal value | 0.588 The Pearson's correlation coefficient expressed as a decimal value |
| Refinement | |
|---|---|
PDB entry ID _entry.id | 7HJ6 |
Deposition date _pdbx_database_status.recvd_initial_deposition_date | 2024-10-08 |
Resolution _refine.ls_d_res_low _refine.ls_d_res_high | 45.3 - 1.580 Å |
Rwork/Rfree _refine.ls_R_factor_R_work _refine.ls_R_factor_R_free | 0.2178 / 0.2902 |
Structure solution method _refine.pdbx_method_to_determine_struct | MOLECULAR REPLACEMENT |
Starting model (for MR) _refine.pdbx_starting_model | WARNING: no starting model (for MR) given |