Data quality metrics extracted from 5hav.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5HAV at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
APS BEAMLINE 14-BM-C
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
APS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
14-BM-C
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2014-11-15
Detector
_diffrn_detector.type
ADSC QUANTUM 315
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.9787
Software
Data reduction
_software.classification
HKL-2000
Data scaling
_software.classification
HKL-2000
Refinement
_software.classification
PHENIX (phenix.refine: 1.9_1692)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 21 21 21
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
39.632 47.609 76.534 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97870 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
50.000 50.000 1.290
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.268 3.450 1.268
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.039 0.032 0.329
Rmeas
_reflns.pdbx_Rrim_I_all _reflns_shell.pdbx_Rrim_I_all
0.044 0.037 0.404
Rpim
_reflns.pdbx_Rpim_I_all _reflns_shell.pdbx_Rpim_I_all
0.020 0.017 0.229
Total number of observations
_reflns.pdbx_number_measured_all
171512 - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_all
39055 2124 1853
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
17.90 - -
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
99.6 99.3 94.8
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
4.4 4.2 2.6
CC(1/2)
_reflns_shell.pdbx_CC_half
- 0.997 0.856

Refinement
PDB entry ID
_entry.id
5HAV
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2015-12-31
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
23.8 - 1.268 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1460 / 0.1780
Structure solution method
_refine.pdbx_method_to_determine_struct
FOURIER SYNTHESIS
Starting model
_refine.pdbx_starting_model
4FWX