Data quality metrics extracted from 9h8u.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 9H8U at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
ESRF BEAMLINE MASSIF-1
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
ESRF
Beamline
_diffrn_source.pdbx_synchrotron_beamline
MASSIF-1
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2024-03-03
Detector
_diffrn_detector.type
DECTRIS PILATUS3 6M
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.965459
Software
Data reduction
_software.classification
XDS
Data scaling
_software.classification
Aimless
Phasing
_software.classification
PHASER
Refinement #1
_software.classification
PHENIX (1.20_4459)
Refinement #2
_software.classification
PHENIX (1.20_4459)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 43 21 2
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
90.565 90.565 290.432 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.96546 Å

Data quality metricsOverall
Low resolution limit [Å]
_reflns.d_resolution_low
290.430
High resolution limit [Å]
_reflns.d_resolution_high
3.000
Rmerge
_reflns.pdbx_Rmerge_I_obs
0.167
Rmeas
_reflns.pdbx_Rrim_I_all
0.176
Rpim
_reflns.pdbx_Rpim_I_all
0.054
Total number of observations
_reflns.pdbx_number_measured_all
247786
Total number unique
_reflns.number_obs
24425
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
10.00
Completeness [%]
_reflns.percent_possible_obs
96.8
Multiplicity
_reflns.pdbx_redundancy
10.1
CC(1/2)
_reflns.pdbx_CC_half
0.995

Refinement
PDB entry ID
_entry.id
9H8U
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2024-10-29
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
76.8 - 3.000 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2061 / 0.2859
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
WARNING: no starting model (for MR) given