Data quality metrics extracted from 9h2d.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 9H2D at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
SLS BEAMLINE X06DA
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
SLS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
X06DA
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2015-11-24
Detector
_diffrn_detector.type
DECTRIS PILATUS3 6M
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.006
Software
Data reduction
_software.classification
XDS
Data scaling
_software.classification
pointless
Phasing
_software.classification
PHASER
Refinement
_software.classification
PHENIX (1.14_3260: ???)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 1 21 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
46.967 90.507 67.423 90.00 97.42 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
1.00600 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
46.573 2.100
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.070 2.070
  Rmerge - -
  Rmeas - -
Rpim
_reflns.pdbx_Rpim_I_all _reflns_shell.pdbx_Rpim_I_all
0.037 0.483
  Total number of observations - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_obs
34038 1631
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
9.70 1.30
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
99.5 96.2
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
6.6 6.4
CC(1/2)
_reflns.pdbx_CC_half _reflns_shell.pdbx_CC_half
0.999 0.777

Refinement
PDB entry ID
_entry.id
9H2D
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2024-10-11
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
46.6 - 2.097 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1893 / 0.2383
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
WARNING: no starting model (for MR) given