Data quality metrics extracted from 9gyq.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 9GYQ at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SEALED TUBE
Source details
_diffrn_source.type
RIGAKU PhotonJet-S
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2023-12-18
Detector
_diffrn_detector.type
RIGAKU HyPix-6000HE
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.54184
Software
Data reduction
_software.classification
CrysalisPro (43.100a)
Data scaling
_software.classification
Aimless (0.7.13)
Phasing
_software.classification
MOLREP (11.9.02)
Refinement
_software.classification
REFMAC (5.8.0430)
General information
Spacegroup name
_symmetry.space_group_name_H-M
C 1 2 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
78.011 46.467 63.839 90.000 94.596 90.000
Wavelength
_diffrn_radiation_wavelength.wavelength
1.54184 Å

Data quality metricsOverall
Low resolution limit [Å]
_reflns.d_resolution_low
18.030
High resolution limit [Å]
_reflns.d_resolution_high
2.000
Rmerge
_reflns.pdbx_Rmerge_I_obs
0.065
Rmeas
_reflns.pdbx_Rrim_I_all
0.080
Rpim
_reflns.pdbx_Rpim_I_all
0.045
  Total number of observations -
Total number unique
_reflns.number_obs
15270
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
12.30
Completeness [%]
_reflns.percent_possible_obs
98.2
Multiplicity
_reflns.pdbx_redundancy
2.7
CC(1/2)
_reflns.pdbx_CC_half
0.996

Refinement
PDB entry ID
_entry.id
9GYQ
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2024-10-02
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
18.0 - 2.001 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1413 / 0.1875
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
WARNING: no starting model (for MR) given