Data quality metrics extracted from 5gya.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5GYA at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
ROTATING ANODE
Source details
_diffrn_source.type
ENRAF-NONIUS FR591
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2014-12-23
Detector
_diffrn_detector.type
Nonius Kappa CCD
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.54
Software
Data collection
_software.classification
DENZO
Data scaling
_software.classification
HKL-2000
Phasing
_software.classification
PHASER
Refinement
_software.classification
REFMAC (5.8.0103)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
42.501 46.250 78.204 79.57 83.10 66.25
Wavelength
_diffrn_radiation_wavelength.wavelength
1.54000 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
30.000 30.000 2.000
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.930 4.150 1.930
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.033 0.027 0.101
  Rmeas - - -
  Rpim - - -
  Total number of observations - - -
Total number unique
_reflns.number_obs
37834 - -
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
23.90 - -
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
93.9 98.6 83.2
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
2.9 3.0 2.3
  CC(1/2) - - -

Refinement
PDB entry ID
_entry.id
5GYA
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2016-09-22
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
30.0 - 1.930 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1659 / 0.2176
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
5GV1