Data quality metrics extracted from 6gvm.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 6GVM at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
SOLEIL BEAMLINE PROXIMA 1
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
SOLEIL
Beamline
_diffrn_source.pdbx_synchrotron_beamline
PROXIMA 1
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2016-09-04
Detector
_diffrn_detector.type
DECTRIS PILATUS 6M
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.97857
Software
Data reduction
_software.classification
XDS
Data scaling
_software.classification
STARANISO
Phasing
_software.classification
PHASER
Refinement
_software.classification
BUSTER (2.10.3)
General information
Spacegroup name
_symmetry.space_group_name_H-M
C 1 2 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
189.267 51.721 144.137 90.00 121.03 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97857 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
49.300 3.730
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
3.500 3.500
  Rmerge - -
  Rmeas - -
  Rpim - -
  Total number of observations - -
Total number unique
_reflns.number_obs
15398 -
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
5.80 -
Completeness [%]
_reflns.percent_possible_obs
90.0 -
Multiplicity
_reflns.pdbx_redundancy
3.4 -
  CC(1/2) - -

Refinement
PDB entry ID
_entry.id
6GVM
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2018-06-21
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
49.3 - 3.500 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2450 / 0.2700
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
5EYP, 4F6R