Data quality metrics extracted from 6gvk.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 6GVK at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
ALBA BEAMLINE XALOC
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
ALBA
Beamline
_diffrn_source.pdbx_synchrotron_beamline
XALOC
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2015-04-18
Detector
_diffrn_detector.type
DECTRIS PILATUS 6M
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.97915
Software
Data reduction
_software.classification
XDS (March 1, 2015)
Data scaling
_software.classification
XSCALE (March 1, 2015)
Phasing
_software.classification
PHASER (2.5.7)
Refinement
_software.classification
PHENIX (1.13_2998: ???)
General information
Spacegroup name
_symmetry.space_group_name_H-M
C 1 2 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
105.58 59.52 42.40 90.0 113.5 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97915 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
38.885 38.885 1.590
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.550 6.930 1.550
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.055 0.041 3.410
Rmeas
_reflns.pdbx_Rrim_I_all _reflns_shell.pdbx_Rrim_I_all
0.056 0.042 3.501
  Rpim - - -
  Total number of observations - - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_obs
35010 419 2562
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
26.42 81.97 1.53
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
99.7 98.4 99.8
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
20.0 19.0 19.4
CC(1/2)
_reflns.pdbx_CC_half _reflns_shell.pdbx_CC_half
1.000 0.999 0.705

Refinement
PDB entry ID
_entry.id
6GVK
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2018-06-21
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
38.9 - 1.550 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1947 / 0.2102
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
4WTW, 4WTX