Data quality metrics extracted from 5gvh.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5GVH at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
MAD
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
PHOTON FACTORY BEAMLINE AR-NW12A
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
Photon Factory
Beamline
_diffrn_source.pdbx_synchrotron_beamline
AR-NW12A
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2006-10-21
Detector
_diffrn_detector.type
ADSC QUANTUM 210r
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.9789, 0.9792, 0.9814
Software
Data collection
_software.classification
HKL-2000
Data scaling
_software.classification
HKL-2000
Phasing #1
_software.classification
SOLVE
Phasing #2
_software.classification
RESOLVE
Refinement
_software.classification
PHENIX (1.10.1_2155)
General information
Spacegroup name
_symmetry.space_group_name_H-M
C 1 2 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
65.611 77.107 59.085 90.00 99.94 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
0.978900.979200.98140 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
40.500 2.380
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.290 2.300
  Rmerge - -
  Rmeas - -
  Rpim - -
  Total number of observations - -
Total number unique
_reflns.number_obs
22681 -
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
34.50 -
Completeness [%]
_reflns.percent_possible_obs
94.5 -
Multiplicity
_reflns.pdbx_redundancy
6.8 -
  CC(1/2) - -

Refinement
PDB entry ID
_entry.id
5GVH
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2016-09-05
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
40.5 - 2.294 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1932 / 0.2303
Structure solution method
_refine.pdbx_method_to_determine_struct
MAD